- The alphas rescue Dr. Rosen's estranged alpha daughter from an assassin. She carries a carefully coded message stolen from Red Flag. But Dr. Rosen suspects it's a ruse which leads him to take precipitous action.
- We open with Rosen speaking with a therapist in a mental health facility where he has been a resident for the past eight months. He's there because he exposed the Alphas and we see the wall of his cell is covered with articles.
Hicks and Harken are working with Clay to catch criminal Alphas. We see them undercover in a grocery store attempting to stop a robbery ring. They nab one of the Alphas, but the other two are able to leave out the back and get into a car. For some reason Cameron has issues using his power and misses a shot to take out their vehicle.
Back in the office we see Harken is having anxiety issues. They talk about the fact Gary has disappeared from a chat room where he regularly contributed. He was assigned to the NSA, which they view as a mistake.
Rachel is having a particularly tough time with her alpha power. She is unable to shut out the world and hasn't left her room for months.
Nina is "pushing" average people on the streets. We see her convince a man to share a cab with her.
Hicks and Harken bring the woman from the robbery to Binghamton. Looking down on the floor they talk about how the alphas are controlled with a chip in their head. They are stunned to spot Gary, who has the tell-tale scar on the back of his neck. We learn that Gary panicked at the NSA when somebody tried to touch him. Clay tried to help him, but he put two agents in the hospital and there was no choice.
Rosen's daughter visits him in the hospital, using her power to take the edge off his sedatives. He tells her that he's confident he'll eventually be released. Rosen thinks Stanton Parrish will so something dramatic and he'll be needed.
While her chip is being inserted, the alpha from the robbery, Debra, uses her power to short out the building's electricity and get into the system. She begins disabling the alpha's chips and they are able to get the jump on the guards. Harken grabs Gary and tries to carry him out of the ward, but he's stopped by an alpha named Asher and tossed into a cell with Gary.
Debra is dating an alpha named Scipio, who seems to be the leader. She tells him there was a failsafe door she couldn't get passed. Scipio begins negotiating with Clay. Scipio demonstrates they are capable of killing their hostages, forcing one to turn a gun on himself and begin pulling the trigger. The safety was on but the message is received. Scipio says "there's only one person I'm willing to negotiate with."
Cut to Clay telling Rosen "there's been an incident."
We see Rosen collecting the rest of the team. He helps get Rachel out of her room and pulls Nina away from the man she was pushing. They both are willing to help Gary.
Harken tries to apologize to Gary, but so far he's not saying anything.
Rosen and the women arrive at Binghamton. His plan is to go inside alone and have Rachel, Nina and Hicks help from the outside. If there is trouble they will come in to help.
After being roughed up by Asher, Scipio welcomes him the "monkey house" with a handshake. With Rachel listening, Scipio talks to Rosen about how they've been treated inside. Scipio asks about them being "mistakes" and wonders if he can turn off the ability from his brains.
Gary is now talking to Harken, thought not about anything important.
Rosen finds it strange Scipio seems so calm under the circumstances and asks whether or not he is employing a delaying tactic. Debra tells Scipio "we're ready."
The monitors fizzle out briefly. When they return, Hicks and the team are stunned to watch a hostage shot and Scipio use his powers to set Rosen on fire. But Rachel thinks something isn't right, as she can't smell and burning from the fire or hear any yelling. Nina tells Hicks "it is all fake," just as he finds Debra using her power to project a fact image on the monitor.
Asher has used the distraction to break through a wall and the alphas are all free. Rosen is left alone, but Harken and Gary are placed in a truck. With some coaching from Rosen, Hicks is about to fire a shot that disables the truck and flips it over. Gary and Harken are fine and Asher is unconscious, but Scipio is gone.
Clay tells Rosen he needs him to put his team back together and fix the Binghamton mistake. He's being offered a full pardon, along with a consulting fee. Rosen agrees on the condition he gets full control.
The team is back together. Gary is unable to interact with anybody. Rosen points out Gary's routine and helps him make a call to his mother. Gary is back and the rest of the team is falling into their old roles. In his office Rosen glances down at Parrish' file.
Cut to Parrish meeting with Rosen's daughter. She is working with him and was behind Rosen being released. They watch as a train derails and explodes.
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