From 05:44 to 05:55- the broken glass from the side door is gone.
When Dr. Ryan arrives at NCIS, her id is attached to her bag. When she leaves, the id is gone.
When Fred Seymour tells Tony that the agency had been short on the FICA withholdings that Tony owed the agency money, that is incorrect. The agency was short on their responsibility, they owed the money to the IRS, Tony didn't owe them anything.
No ethical therapist, counselor, psychiatrist, or psychologist would have a "dual relationship", meaning ethically, no one can be a therapist for someone they are friends with or have dated/slept with. Many state boards even prohibit it. Morally & ethically, Dr Cranston as at fault for accepting Banks as a patient and so is Dr Ryan for not reporting Cranston's violations.
When Gibbs hands a cup of coffee to Dr. Ryan, the cup is visibly empty. There is also no steam coming from the cup and she carelessly handles it throughout the scene.
At 32:18- Hollywood cliche #169: obviously fake typing.
9-to-5 government workers are paid according to their pay grade and years of service. It is NOT a secret.
Ducky calls the noose a "double knot" which it clearly isn't. It is a hangman's knot.
When Dr. Rachel Cranston first appears. She gasps after seeing the dead body of Dr. Robert Banks, when it cuts back to Robert, you can see him breath.